Henneguya Thélohan, 1892 (additional source)
Henneguya akule Work, Takata, Whipps & Kent, 2008 (additional source)
Henneguya arapaima Feijó, Arana, Ceccarelli & Adriano, 2008 (additional source)
Henneguya astyanax Vita, Corral, Matos & Azevedo, 2003 (additional source)
Henneguya auchenoglanii Kostoïngue, Diebakate, Faye & Toguebaye, 2001 (additional source)
Henneguya azevedoi Barassa, Adriano, Cordeiro, Arana & Ceccarelli, 2011 (additional source)
Henneguya basifilamentalis Molnár, Székely, Mohamed & Shaharom-Harrison, 2006 (additional source)
Henneguya caudalongula Adriano, Arana & Cordeiro, 2005 (additional source)
Henneguya caudicula Eiras, Takemoto & Pavanelli, 2008 (additional source)
Henneguya chydadea Barassa, Cordeiro & Arana, 2003 (additional source)
Henneguya clini Reed, Basson, Van As & Dykova, 2007 (additional source)
Henneguya corruscans Eiras, Takemoto & Pavanelli, 2009 (additional source)
Henneguya curimata Azevedo & Matos, 2002 (additional source)
Henneguya curvata Barassa, Adriano, Arana & Cordeiro, 2003 (additional source)
Henneguya cynoscioni Dyková, Buron, Roumillat & Fiala, 2011 (additional source)
Henneguya cyphocharax Abdallah, De Azevedo, Luque & Do Bomfim, 2007 (additional source)
Henneguya daoudi Székely, Shaharom-Harrison, Cech, Mohamed & Molnár, 2009 (additional source)
Henneguya eirasi Naldoni, Arana, Maia, Silva, Carriero, Ceccarelli, Tavares & Adriano, 2011 (additional source)
Henneguya friderici Casal, Matos & Azevedo, 2003 (additional source)
Henneguya garavelli Martins & Onaka, 2006 (additional source)
Henneguya guanduensis Abdallah, De Azevedo, Luque & Do Bomfim, 2007 (additional source)
Henneguya hemiodopsis Azevedo, Casal, Mendonça & Matos, 2009 (additional source)
Henneguya lateolabracis Yokoyama, Kawakami, Yasuda & Tanaka, 2003 (additional source)
Henneguya logonensis Kostoïngue, Diebakate, Faye & Toguebaye, 2001 (additional source)
Henneguya mailaoensis Kostoïngue, Diebakate, Faye & Toguebaye, 2001 (additional source)
Henneguya mandouri Rabie, Mohammed, Hussein & Hussein, 2009 (additional source)
Henneguya manipurensis Hemanand, Meitei, Bandyopadhyay & Mitra, 2008 (additional source)
Henneguya massii Kostoïngue, Diebakate, Faye & Toguebaye, 2001 (additional source)
Henneguya mormyri Kostoïngue, Diebakate, Faye & Toguebaye, 2001 (additional source)
Henneguya multiplasmodialis Adriano, Carriero, Maia, Silva, Naldoni, Ceccarelli & Arana, 2012 (additional source)
Henneguya nkamensis Fomena, Folefack & Bouix, 2008 (basis of record)
Henneguya ntondei Fomena, Folefack & Bouix, 2008 (basis of record)
Henneguya pagri Yokoyama, Itoh & Tanaka, 2005 (additional source)
Henneguya paranaensis Eiras, Pavanelli & Takemoto, 2004 (additional source)
Henneguya pellucida Adriano, Arana & Cordeiro, 2005 (additional source)
Henneguya pethericii Fomena, Folefack & Bouix, 2008 (basis of record)
Henneguya pilosa Azevedo & Matos, 2003 (additional source)
Henneguya pseudoplatystoma Naldoni, Arana, Maia, Ceccarelli, Tavares, Borges, Pozo & Adriano, 2009 (additional source)
Henneguya pseudorhinogobii Kageyama, Yanagida, Ohara & Yokoyama, 2009 (additional source)
Henneguya rhamdia Matos & Azevedo, 2005 (additional source)
Henneguya rondoni Azevedo, Casal, Matos & Matos, 2008 (additional source)
Henneguya samochimensis Reed, Basson & Van As, 2003 (additional source)
Henneguya schizodon Eiras, Malta, Varela & Pavanelli, 2004 (additional source)
Henneguya shackletoni Brickle, Kalavati & MacKenzie, 2006 (additional source)
Henneguya shariffi Molnár, Székely, Mohamed & Shaharom-Harrison, 2006 (additional source)
Henneguya sutherlandi Griffin, Pote, Wise, Greenway, Mauel & Camus, 2008 (additional source)
Henneguya tachysuri Menon, 1979 (additional source)
Henneguya torpedo Azevedo, Casal, Matos, Alves & Matos, 2011 (additional source)
Henneguya tunisiensis Bahri, Marton, Marques & Eszterbauer, 2010 (additional source)
Henneguya wolinensis Romuk-Wodoracki, 1990 (additional source)