• Holothuria (Thyone) accepted as Thyone Oken, 1815
• Holothuria (Thyone) eaouari Lesson, 1830 accepted as Ochetostoma eaouari (Lesson, 1830)
• Holothuria (Thyone) edulis Lesson, 1830 represented as Holothuria edulis Lesson, 1830
• Thyone Oken, 1815
• Thyone Philippi, 1840 accepted as Porcellidium Claus, 1860
• Thyone (Sclerodactyla)
• Thyone (Sclerodactyla) braziliensis Verrill, 1868 accepted as Ocnus braziliensis (Verrill, 1868)
• Thyone (Stolus)
• Thyone (Stolus) chilensis Semper, 1868 accepted as Eucyclus chilensis (Semper, 1868) accepted as Athyonidium chilensis (Semper, 1868)
• Thyone (Stolus) mirabilis Ludwig, 1875 accepted as Havelockia versicolor (Semper, 1867)
• Thyone (Stolus) rigida Semper, 1867 accepted as Stolus buccalis (Stimpson, 1855)
• Thyone (Stolus) rosacea Semper, 1869 accepted as Staurothyone rosacea (Semper, 1869)
• Thyone (Thyone)
• Thyone (Thyone) suspecta Ludwig, 1875 accepted as Parathyone suspecta (Ludwig, 1875)
• Thyone (Thyonidium)
• Thyone (Thyonidium) Lechleri Lampert, 1885 accepted as Trachythyone lechleri (Lampert, 1885)
• Thyone adinopoda Pawson & Miller, 1981 accepted as Sclerothyone adinopoda (Pawson & Miller, 1981)
• Thyone alba Clark, 1938 accepted as Thyone dura Koehler & Vaney, 1908
• Thyone andrewsii (Farran, 1860)
• Thyone anomala Östergren, 1898
• Thyone anomula Massin, 1987 accepted as Thyone anomala Östergren, 1898
• Thyone articulata Vaney, 1908 accepted as Thyonina articulata (Vaney, 1908)
• Thyone aurea (Quoy & Gaimard, 1834)
• Thyone avenusta Cherbonnier, 1970
• Thyone axiologa Clark, 1938 accepted as Stolus axiologa (H.L. Clark, 1938)
• Thyone bacescoi Cherbonnier, 1972
• Thyone belli Ludwig, 1886 accepted as Pseudothyone belli (Ludwig, 1886)
• Thyone benti Deichmann, 1937
• Thyone benti var. zacae Deichmann, 1938 accepted as Thyone benti Deichmann, 1937
• Thyone bicornis Ohshima, 1915
• Thyone bidentata Deichmann, 1941
• Thyone brasiliana Prata, Manso & Christoffersen, 2020
• Thyone brevidentis Hutton, 1872 accepted as Squamocnus brevidentis (Hutton, 1872)
• Thyone briareus (Lesueur, 1824) accepted as Holothuria briareus Lesueur, 1824 accepted as Sclerodactyla briareus (Lesueur, 1824)
• Thyone buccalis Stimpson, 1855 accepted as Stolus buccalis (Stimpson, 1855)
• Thyone buccalis bourdesae Domantay, 1962 accepted as Stolus buccalis (Stimpson, 1855)
• Thyone buccalis var. pallida Clark, 1938 accepted as Stolus buccalis (Stimpson, 1855)
• Thyone calcarea Pearson, 1903 accepted as Havelockia versicolor (Semper, 1867)
• Thyone carens Cherbonnier, 1988
• Thyone castanea Lampert, 1889 accepted as Thyone papuensis Théel, 1886
• Thyone caudata Hutton, 1872 accepted as Pentadactyla longidentis (Hutton, 1872)
• Thyone ceciliae Domantay, 1953 (unaccepted > nomen nudum)
• Thyone ceciliae Domantay, 1961 (uncertain > nomen dubium)
• Thyone cherbonnieri Reys, 1959
• Thyone clarki Domantay, 1953 (unaccepted > nomen nudum)
• Thyone clarki Domantay, 1958 (uncertain > nomen dubium)
• Thyone cognata (Lampert, 1885) accepted as Stolus cognatus (Lampert, 1885)
• Thyone colnettensis Domantay, 1953 (unaccepted > nomen nudum)
• Thyone colnettensis Domantay, 1961 (uncertain > nomen dubium)
• Thyone comata Cherbonnier, 1988
• Thyone constituta Sluiter, 1910 accepted as Phyllophorus (Urodemella) occidentalis (Ludwig, 1875) accepted as Euthyonidiella occidentalis (Ludwig, 1875)
• Thyone crassidisca Pawson & Miller, 1981
• Thyone crebrapodia Cherbonnier, 1988
• Thyone cunninghami Bell, 1883 accepted as Hemioedema spectabilis (Ludwig, 1883)
• Thyone curvata Lampert, 1885
• Thyone deichmannae Madsen, 1941
• Thyone discolor Sluiter, 1901
• Thyone dura Koehler & Vaney, 1908
• Thyone elegans Norman, 1869 accepted as Havelockia inermis (Heller, 1868) accepted as Thyone inermis Heller, 1868
• Thyone festina Koehler & Vaney, 1908 accepted as Havelockia festina (Koehler & Vaney, 1908)
• Thyone flexus Hodge, 1865 accepted as Thyone fusus (O.F. Müller, 1776)
• Thyone flindersi O'Loughlin in O'Loughlin, Barmos & VandenSpiegel, 2012
• Thyone floccosa Norman, 1864 (unaccepted > nomen nudum)
• Thyone florianoi Martins & Tavares, 2018
• Thyone floridana Domantay, 1953 (unaccepted > nomen nudum)
• Thyone floridana Domantay, 1958 (uncertain > nomen dubium)
• Thyone fusca Pearson, 1903
• Thyone fusus (O.F. Müller, 1776)
• Thyone fusus chinensis Yang, 1937
• Thyone fusus mediterranea Madsen, 1941
• Thyone fusus var. chinensis Yang, 1937 accepted as Thyone fusus chinensis Yang, 1937
• Thyone fusus var. mediterranea Madsen, 1941 accepted as Thyone fusus mediterranea Madsen, 1941
• Thyone fusus var. papuensis Théel, 1886 accepted as Thyone papuensis Théel, 1886
• Thyone gadeana Perrier R., 1898
• Thyone glasselli Deichmann, 1936 accepted as Athyone glasselli (Deichmann, 1936)
• Thyone grisea Clark, 1938
• Thyone guillei Cherbonnier, 1988
• Thyone hassleri Théel, 1886 accepted as Trachythyone lechleri (Lampert, 1885)
• Thyone herberti Thandar & Rajpal, 1999
• Thyone hirta Cherbonnier, 1970
• Thyone hornelli Pearson, 1903 accepted as Phyllophorus (Urodemella) brocki Ludwig, 1888 accepted as Phyllophorus brocki Ludwig, 1888
• Thyone imbricata Ohshima, 1915 accepted as Stereoderma imbricata (Ohshima, 1915)
• Thyone imperfecta (Cherbonnier, 1970)
• Thyone inermis Heller, 1868
• Thyone inermis var. coronensis Domantay, 1953 (unaccepted > nomen nudum)
• Thyone inermis var. coronensis Domantay, 1961 (uncertain > nomen dubium)
• Thyone infusca Cherbonnier, 1954
• Thyone joshuai O'Loughlin in O'Loughlin, Barmos & VandenSpiegel, 2012
• Thyone kerkosa O'Loughlin in O'Loughlin, Barmos & VandenSpiegel, 2012
• Thyone kyusyuensis Yamana, Ogawa & Ohtsuka in Yamana et al. 2021
• Thyone liaoi Yamana, Ogawa & Ohtsuka in Yamana et al. 2021
• Thyone longicornis Cherbonnier, 1988
• Thyone longidentis Hutton, 1872 accepted as Pentadactyla longidentis (Hutton, 1872)
• Thyone lugubris Deichmann, 1939 accepted as Pachythyone lugubris (Deichmann, 1939)
• Thyone meridionalis Bell, 1883 accepted as Hemioedema spectabilis (Ludwig, 1883)
• Thyone mexicana Deichmann, 1946 accepted as Allothyone mexicana (Deichmann, 1946)
• Thyone micra Clark, 1938
• Thyone micropunctata Sluiter, 1910 accepted as Pseudothyone belli (Ludwig, 1886)
• Thyone minuta H.L. Clark, 1938 accepted as Stolus minutus (H.L. Clark, 1938)
• Thyone montereyensis (Deichmann, 1938) accepted as Pentamera montereyensis Deichmann, 1938