• Flabelligera Sars, 1829
• Flabelligera abyssorum McIntosh in Tizard, Moseley, Buchanan & Murray, 1885 accepted as Buskiella abyssorum McIntosh, 1885
• Flabelligera affinis M. Sars, 1829
• Flabelligera bicolor (Schmarda, 1861)
• Flabelligera biscayensis Kolmer, 1985
• Flabelligera bofortica [misspelling of bophortica] accepted as Flabelligera bophortica Annenkova-Chlopina, 1924
• Flabelligera bophortica Annenkova-Chlopina, 1924
• Flabelligera buskii McIntosh, 1869 (uncertain > taxon inquirendum)
• Flabelligera claparedii Saint-Joseph, 1898 accepted as Flabelliderma claparedii (Saint-Joseph, 1898)
• Flabelligera commensalis Moore, 1909 accepted as Flabesymbios commensalis (Moore, 1909)
• Flabelligera diplochaitos [auct. misspelling for 'diplochaitus'] accepted as Flabelligera diplochaitus (Otto, 1820)
• Flabelligera diplochaitus (Otto, 1820)
• Flabelligera essenbergae Hartman, 1961 accepted as Flabelliderma essenbergae (Hartman, 1961) accepted as Flabelliderma papillosa (Essenberg, 1922)
• Flabelligera essenbergae tenebricosa Berkeley, 1966
• Flabelligera gourdoni Gravier, 1906 accepted as Flabelliderma gourdoni (Gravier, 1906)
• Flabelligera grubei (Webster & Benedict, 1887)
• Flabelligera haerens Chamberlin, 1919 accepted as Flabesymbios commensalis (Moore, 1909)
• Flabelligera haswelli Salazar-Vallejo, 2012
• Flabelligera idiura [misspelling of 'induta'] accepted as Flabelligera induta Ehlers, 1897 accepted as Flabehlersia induta (Ehlers, 1897)
• Flabelligera induta Ehlers, 1897 accepted as Flabehlersia induta (Ehlers, 1897)
• Flabelligera infundibularis Johnson, 1901
• Flabelligera japonica Jimi in Jimi, Hasegawa, Taru, Oya, Kohtsuka, Tsuchida, Fujiwara & Woo, 2022
• Flabelligera kaimeiae Jimi in Jimi, Hasegawa, Taru, Oya, Kohtsuka, Tsuchida, Fujiwara & Woo, 2022
• Flabelligera kajiharai Jimi in Jimi, Hasegawa, Taru, Oya, Kohtsuka, Tsuchida, Fujiwara & Woo, 2022
• Flabelligera kozaensis Jimi in Jimi, Hasegawa, Taru, Oya, Kohtsuka, Tsuchida, Fujiwara & Woo, 2022
• Flabelligera lingulata Ehlers, 1904 accepted as Flabelligera bicolor (Schmarda, 1861)
• Flabelligera luctator (Stimpson, 1855)
• Flabelligera marenzelleri McIntosh, 1905 accepted as Flabelligera affinis M. Sars, 1829
• Flabelligera mastigophora Annenkova, 1952 accepted as Annenkova mastigophora (Annenkova, 1952)
• Flabelligera multipapillata Hartmann-Schröder, 1965
• Flabelligera mundata Gravier, 1906 accepted as Flabegraviera mundata (Gravier, 1906)
• Flabelligera nuniezi Salazar-Vallejo, 2012
• Flabelligera orensanzi Salazar-Vallejo, 2012
• Flabelligera papillata Hartman, 1965 accepted as Flabelligella papillata Hartman, 1965
• Flabelligera pennigera Ehlers, 1908
• Flabelligera pergamentacea Ehlers, 1913
• Flabelligera persimilis Annenkova-Chlopina, 1924 accepted as Flabehlersia persimilis (Annenkova-Chlopina, 1924)
• Flabelligera picta Ehlers, 1913
• Flabelligera pruvoti Fauvel, 1930 accepted as Flabelliderma pruvoti (Fauvel, 1930)
• Flabelligera salazarae Salazar-Vallejo, 2012
• Flabelligera sekii Jimi in Jimi, Hasegawa, Taru, Oya, Kohtsuka, Tsuchida, Fujiwara & Woo, 2022
• Flabelligera semiannulata Ehlers, 1904 accepted as Flabelligera bicolor (Schmarda, 1861)
• Flabelligera sordida (Quatrefages, 1849)
• Flabelligera vaginifera (Rathke, 1843)