• Bathytoma G. F. Harris & Burrows, 1891
• Bathytoma (Bathytoma) G. F. Harris & Burrows, 1891 represented as Bathytoma G. F. Harris & Burrows, 1891
• Bathytoma (Bathytoma) bartrumi Laws, 1939 † represented as Bathytoma bartrumi Laws, 1939 †
• Bathytoma (Bathytoma) haasti (F. W. Hutton, 1877) † represented as Bathytoma haasti (F. W. Hutton, 1877) †
• Bathytoma (Epalxis) Cossmann, 1889 † accepted as Epalxis Cossmann, 1889 †
• Bathytoma (Epalxis) clathratula Cossmann, 1919 † (uncertain > unassessed)
• Bathytoma (Epalxis) rosatii Dainelli, 1915 † (uncertain > unassessed)
• Bathytoma (Glyptotoma) T. L. Casey, 1904 † accepted as Glyptotoma T. L. Casey, 1904 †
• Bathytoma (Glyptotoma) fischerana G. D. Harris, 1937 † accepted as Glyptotoma fischerana (G. D. Harris, 1937) †
• Bathytoma (Micantapex) Iredale, 1936 accepted as Bathytoma G. F. Harris & Burrows, 1891
• Bathytoma (Micantapex) arbucklei Kilburn, 1986 accepted as Bathytoma arbucklei Kilburn, 1986
• Bathytoma (Micantapex) belaeformis (G. B. Sowerby III, 1903) accepted as Bathytoma belaeformis (G. B. Sowerby III, 1903)
• Bathytoma (Micantapex) herklotsi (K. Martin, 1879) † accepted as Bathytoma herklotsi (K. Martin, 1879) †
• Bathytoma (Micantapex) murdochi H. J. Finlay, 1930 † accepted as Bathytoma murdochi H. J. Finlay, 1930
• Bathytoma (Micantapex) murdochi murdochi H. J. Finlay, 1930 † accepted as Bathytoma murdochi H. J. Finlay, 1930
• Bathytoma (Parabathytoma) Shuto, 1961 represented as Bathytoma G. F. Harris & Burrows, 1891
• Bathytoma (Parabathytoma) helenae Kilburn, 1974 represented as Bathytoma helenae Kilburn, 1974
• Bathytoma (Parabathytoma) prodicia Kilburn, 1986 represented as Bathytoma prodicia Kilburn, 1986
• Bathytoma (Parabathytoma) regnans Melvill, 1919 accepted as Bathytoma regnans Melvill, 1919
• Bathytoma (Parabathytoma) striatotuberculata (Yokoyama, 1928) represented as Bathytoma striatotuberculata (Yokoyama, 1928)
• Bathytoma (Parabathytoma) visagei Kilburn, 1973 represented as Bathytoma visagei Kilburn, 1973
• Bathytoma (Riuguhdrillia) Oyama, 1951 represented as Bathytoma G. F. Harris & Burrows, 1891
• Bathytoma (Riuguhdrillia) engonia (R. B. Watson, 1881) represented as Bathytoma engonia (R. B. Watson, 1881)
• Bathytoma (Riuguhdrillia) parengonia (Dell, 1956) represented as Bathytoma parengonia (Dell, 1956)
• Bathytoma adelaidensis Ludbrook, 1941 † accepted as Epidirona adelaidensis (Ludbrook, 1941) † accepted as Epideira adelaidensis (Ludbrook, 1941) †
• Bathytoma agnata Hedley & Petterd, 1906
• Bathytoma alexeevi Amitrov & Mironova, 1973 †
• Bathytoma antecostata Suter, 1917 † accepted as Tomopleura excavata (F. W. Hutton, 1877) †
• Bathytoma arbucklei Kilburn, 1986
• Bathytoma atractoides (R. B. Watson, 1881)
• Bathytoma badifasciata Puillandre, Sysoev, B. M. Olivera, Couloux & Bouchet, 2010
• Bathytoma bartrumi Laws, 1939 †
• Bathytoma belaeformis (G. B. Sowerby III, 1903)
• Bathytoma biconica Hedley, 1903 accepted as Benthofascis biconica (Hedley, 1903)
• Bathytoma bitorquata (E. von Martens, 1901)
• Bathytoma boholica Parth, 1994
• Bathytoma boundeyi Waring, 1917 † accepted as Parasyrinx boundeyi (Waring, 1917) †
• Bathytoma carnicolor Puillandre, Sysoev, B. M. Olivera, Couloux & Bouchet, 2010
• Bathytoma carpenteriana (Gabb, 1865) † accepted as Megasurcula carpenteriana (Gabb, 1865)
• Bathytoma carpenteriana var. fernandoana R. Arnold, 1907 † (uncertain > unassessed)
• Bathytoma cataphracta (Brocchi, 1814) †
• Bathytoma cataphracta mut. burdigalica Peyrot, 1931 † accepted as Bathytoma cataphracta (Brocchi, 1814) †
• Bathytoma cataphracta mut. pyrenaica Peyrot, 1931 † accepted as Bathytoma pyrenaica Peyrot, 1931 †
• Bathytoma cataphracta pliodebilis Ruggieri & Curti, 1959 † accepted as Bathytoma cataphracta (Brocchi, 1814) †
• Bathytoma cataphracta var. fistulosa Hölzl, 1958 † (uncertain > unassessed)
• Bathytoma cataphracta var. gedrosiana Vredenburg, 1925 † (uncertain > unassessed)
• Bathytoma cataphracta var. taurodenticulata Montanaro, 1937 † accepted as Bathytoma cataphracta (Brocchi, 1814) †
• Bathytoma clarkiana Rivers, 1914 † (uncertain > unassessed)
• Bathytoma collaris (Noszky, 1940) †
• Bathytoma colorata Sysoev & Bouchet, 2001 accepted as Gemmuloborsonia colorata (Sysoev & Bouchet, 2001)
• Bathytoma condonana F. M. Anderson & B. Martin, 1914 † accepted as Megasurcula condonana (F. M. Anderson & B. Martin, 1914) †
• Bathytoma congesta (Conrad, 1848) † (uncertain > unassessed)
• Bathytoma congesta fontis MacNeil, 1984 †
• Bathytoma consors Puillandre, Sysoev, B. M. Olivera, Couloux & Bouchet, 2010
• Bathytoma coweorum Beu, 1970 †
• Bathytoma cranaos Puillandre, Sysoev, B. M. Olivera, Couloux & Bouchet, 2010
• Bathytoma cygnus García, 2021
• Bathytoma decomposita (Tate, 1894) †
• Bathytoma degrangei Peyrot, 1931 †
• Bathytoma discors (A. W. B. Powell, 1942) †
• Bathytoma engonia (R. B. Watson, 1881)
• Bathytoma episoma Puillandre, Sysoev, B. M. Olivera, Couloux & Bouchet, 2010
• Bathytoma excavata Suter, 1917 † accepted as Austrotoma excavata (Suter, 1917) †
• Bathytoma eximia Suter, 1917 † accepted as Austrotoma eximia (Suter, 1917) †
• Bathytoma filaris (Marwick, 1931) †
• Bathytoma finlayi Laws, 1939 †
• Bathytoma fissa (E. von Martens, 1901)
• Bathytoma fontinalis (Tate, 1894) †
• Bathytoma formosensis Vera-Peláez, 2004
• Bathytoma fortinodosa (Marwick, 1931) †
• Bathytoma gabbiana Dall, 1909 † (uncertain > unassessed)
• Bathytoma gabrielae Bozzetti, 2006
• Bathytoma gordonlarki J. K. Tucker & B. M. Olivera, 2011
• Bathytoma gratiosa Suter, 1908 accepted as Fenestrosyrinx gratiosa (Suter, 1908) accepted as Taranis gratiosa (Suter, 1908)
• Bathytoma haasti (F. W. Hutton, 1877) †
• Bathytoma hawera Laws, 1940 †
• Bathytoma hecatorguia (Verco, 1907)
• Bathytoma hedlandensis Tippett & Kosuge, 1994
• Bathytoma helenae Kilburn, 1974
• Bathytoma herklotsi (K. Martin, 1879) †
• Bathytoma hetzeli K. Martin, 1933 †
• Bathytoma hokianga Laws, 1947 †
• Bathytoma jugleri (R. A. Philippi, 1847) †
• Bathytoma junghuhni (Tesch, 1915) †
• Bathytoma klinkeni Poppe & Tagaro, 2021
• Bathytoma lacertosus (Hedley, 1922)
• Bathytoma lanotensis Lozouet, 2017 †
• Bathytoma leunisii (R. A. Philippi, 1844) †
• Bathytoma luehdorfi (Lischke, 1872)
• Bathytoma media (Marwick, 1931) †
• Bathytoma michailensis Ilyina, 1960 † (uncertain > taxon inquirendum)
• Bathytoma mioturbida Kautsky, 1925 †
• Bathytoma mitchelsoni A. W. B. Powell, 1935 †
• Bathytoma mitrella (Dall, 1881)
• Bathytoma murdochi H. J. Finlay, 1930
• Bathytoma murdochi murdochi H. J. Finlay, 1930 accepted as Bathytoma murdochi H. J. Finlay, 1930
• Bathytoma neocaledonica Puillandre, Sysoev, B. M. Olivera, Couloux & Bouchet, 2010
• Bathytoma netrion Puillandre, Sysoev, B. M. Olivera, Couloux & Bouchet, 2010
• Bathytoma ngatapa (Marwick, 1931) †
• Bathytoma oldhami (E. A. Smith, 1899)